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ShiitakeGDB includes genome assemblies, annotation of genes, repeats, heterozygous SNPs, tRNA, miRNAs, full length cDNA, transcriptome data for Lentinula edodes. All of the data are available in download page. In comparative genome part, 18 fungal genomes were used in ShiitakeGDB database. More detail information see data resources page.

The MD5 values of all download files: MD5SUM.txt

Genome of Shiitake (Lentinula edodes) Strain W1-26
1. Raw Data of Genome Sequencing
Whole Genome Sequencing of Shiitake : Raw Data 50GB (sra format) Download
2. Genome Assembly
L.edodes-v1.0.Contigs.fasta.gz 11,737 KB Download
L.edodes-v1.0.Scaffolds.fasta.gz 12,724 KB Download
L.edodes-v1.0.Scaffolds.masked.fasta.gz 10,150 KB Download
3. Gene Models
L.edodes-v1.0.GeneModels.gff3.gz 2,688 KB Download
L.edodes-v1.0.GeneModels.gtf.gz 2,936 KB Download
L.edodes-v1.0.BestGeneModels.gff3.gz 2,667 KB Download
L.edodes-v1.0.protein.fasta.gz 4,307 KB Download
L.edodes-v1.0.BestProtein.fasta.gz 4,133 KB Download
L.edodes-v1.0.gene.fasta.gz 11,000 KB Download
L.edodes-v1.0.cds.fasta.gz 6,828 KB Download
L.edodes-v1.0.cdna.fasta.gz 8,574 KB Download
4. Non-coding RNA sequences
L.edodes-v1.0.tRNAs.gz 40,000 KB Download
L.edodes-v1.0.rRNA.gz 40,000 KB Download
L.edodes-v1.0.miRNA.gz 40,000 KB Download
5. Gene Functional Annotations
L.edodes-v1.0.nr.tab.gz 16,898 KB Download
L.edodes-v1.0.swissprot.tab.gz 5,850 KB Download
L.edodes-v1.0.cog.tab.gz 8,695 KB Download
L.edodes-v1.0.kog.tab.gz 12,186 KB Download
L.edodes-v1.0.interpro.tab.gz 3,543 KB Download
L.edodes-v1.0.go.tab.gz 977 KB Download
L.edodes-v1.0.kegg.tab.gz 461 KB Download
L.edodes-v1.0.cdd.tab.gz 909 KB Download
Transcriptome of Shiitake (Lentinula edodes) Strain W1
1. Raw Data of RNA-seq by Illumina Hiseq 2000 Platform
Transcriptome of Shiitake (Lentinula edodes) Strain L135
1. Raw Data of RNA-seq by Illumina Hiseq 2000 Platform (14G bases)
Early stage sample of L. edodes mycelium with 30 days darkness (118 : SRR893107) 3,149,574 KB download
Late stage sample of L. edodes mycelium with 80 days darkness (313W : SRR893108) 2,999,788 KB download
Late stage sample of L. edodes mycelium with 30 days darkness followed by 50 days in the light (313C : SRR527823) 2,946,468 KB download
2. Assembled Contigs by Trinity (version: trinityrnaseq_r20140717)
L.edodes_L135_trinity.fasta.gz 12,086 KB download
Last updated: March 28th 2016
Copyright: Institue of Applied Mycology, Huazhong Agricultral University, Wuhan, Hubei, China.
For questions and comments, please send email to chenllianfu@foxmail.com or bianyb.123@163.com.